Multiple Sequence Alignment of Bioinformatics
نویسندگان
چکیده
Bioinformatics is an interdisciplinary area of research, which also plays a vital role in the field of agriculture based studies. Tools of bioinformatics provides significant role in agriculture research. Present paper is also focusing on agriculture informatics. As we know using bioinformatics tool we can explore many more hidden information from agriculture data. In this paper we had applied CLUSTAL O tool for multiple sequence alignment of nine different model plants have same protein glycogen synthase. We had constructed phylogenetic tree for investigating relationship between model plants neighbor -joining tree without distance corrections by CLUSTAL O tool.
منابع مشابه
gpALIGNER: A Fast Algorithm for Global Pairwise Alignment of DNA Sequences
Bioinformatics, through the sequencing of the full genomes for many species, is increasingly relying on efficient global alignment tools exhibiting both high sensitivity and specificity. Many computational algorithms have been applied for solving the sequence alignment problem. Dynamic programming, statistical methods, approximation and heuristic algorithms are the most common methods appli...
متن کاملAn Application of the ABS LX Algorithm to Multiple Sequence Alignment
We present an application of ABS algorithms for multiple sequence alignment (MSA). The Markov decision process (MDP) based model leads to a linear programming problem (LPP), whose solution is linked to a suggested alignment. The important features of our work include the facility of alignment of multiple sequences simultaneously and no limit for the length of the sequences. Our goal here is to ...
متن کاملMolecular and Bioinformatics Analysis of Allelic Diversity in IGFBP2 Gene Promoter in Indigenous Makuee and Lori-Bakhtiari Sheep Breeds
The aim of this study was to perform molecular and bioinformatics analysis of IGFBP2 gene promoter in association with some economic traits in indigenous Makuee (MS) and Lori-Bakhtiari (LB) breeds. DNA was extracted from blood samples of 120 MS and 200 LB and a 297 bp fragment from the upstream sequences of studied gene was amplified and genotyped by single-strand conformational polymo...
متن کاملSQUINT: a multiple alignment program and editor
SUMMARY SQUINT is a sequence alignment tool, and combines both automated progressive sequence alignment with facilities for manual editing. The program imports nucleotide or amino acid sequence multiple alignment files in standard formats, and permits users to view two translations of the same multiple alignment simultaneously. Edits in one view are instantaneously reflected in the other, and t...
متن کاملMSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information
Here we present the MSA-PAD application, a DNA multiple sequence alignment framework that uses PFAM protein domain information to align DNA sequences encoding either single or multiple protein domains. MSA-PAD has two alignment options: gene and genome mode.
متن کاملMultiple DNA Sequence Alignment Based on Genetic Simulated Annealing Techniques
Multiple DNA sequence alignment is an important research topic of bioinformatics. In this paper, we present a new method for multiple DNA sequence alignment, based on genetic simulated annealing techniques, to choose the best cutting point set of the multiple DNA sequence set. The experimental results show that the proposed method gets higher scores and more match columns than the method presen...
متن کامل